Compiling To LaTeX -- One file per section?

@AmberV, for Quarto, there is no need to fix cross-reference markup this way. All one has to do is use its proper markup for the element being referenced.

If I had the following:

## Text {#sec-text}

Lorem...

This would work anywhere else in the project (regardless of Book/Website).

So on and so on [@sec-text].

The same goes for Figures, Tables, Listings, and Equations, apart from Conjectures, Corollaries, Definitions, Examples, Exercises, Lemmas, Propositions, and Theorems.

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