Well, given the way it currently generates an RTF file, that might be hard. At least, I am taking into consideration your explanation from an earlier comment in this thread. It would be awesome if you could. By default MMD’s RTF exporter is slightly more functional than Scrivener’s RTFD export, mainly in that footnotes are cross linked between each other. Click on a reference number, and you get sent to the footnote. But they are essentially just flattened footnotes like RTFD does.
I think the main question that should perhaps come from the user base is: Will anyone using MMD be interested in a high performance RTF file? If RTF is your goal, wouldn’t the use of Scrivener’s rich text features be the best route to take? I guess I kind of just saw MMD->RTF as a nice quick preview for us LaTeX junkies who wanted to print a few pages before heading out for the day. I could be entirely alone in that, though. The main thing is that RTF has no structure, really. XHTML and LaTeX both take advantage of structure. XHTML especially so, since it is XML at its core. RTF, you lose all of that structure you carefully placed into the document with MMD.