Pardon me if this has been addressed before. After compiling manuscript I noticed inconsistent indents and in some cases paragraphs that run into each other. Is there some tool that will apply consistent paragraph indents throughout the manuscript? Thanks.
Override main text and notes formatting, in the Formatting compile option pane is what you want. Though do note that can only fix what is already roughly consistent. If you’ve got physical tab characters littered sporadically in the document, line feeds instead of paragraph breaks here and there, and other “semantic” issues in the source text, this won’t clean that up. It only makes formatting uniform.