The double-document thing is if you “stack” one document on another. Essentially, even folders are nothing but a regular document with a special icon; they can even have their own text. As an experiment, create to documents in your research folder. Drag one on top of the other. You’ll now have a “stack” of documents that acts pretty similarly to a folder with documents in it. Hope that helps.
When you select different options from the drop down (like Standard Manuscript or Paperback Novel), it sets things up to come out like those kinds of things. Standard Manuscript format is double-spaced with 1 inch margins, chapter titles and numbers, and so-forth; whereas Paperback Novel format is single-spaced, narrower margins, etc… They’re presets of compile settings to get you close to what you may need for a particular kind of output (submission for an agent vs. self-publication in these examples), but they’re only starting points, and once you switch to one, you lose any customization to that project’s compile settings that you may have made. In this case, that may be a good thing.
The e-book Format As: setting is probably a good start. So select that again, and try the following:
In the Formatting section, click on the “Level 1+” single-document icon (the 3rd one). Click on the button that has a plus sign and two horizontal lines (just to the right of the “Options…” button), this will create another line, a copy of the “Level 1+” line named “Level 2+”.
Check the “Title” check-box on the Level 1 line.
Now at the bottom of the Compile dialogue, select whatever output format you want (Word compatible, PDF, epub, etc…) and try the compile.
That should get you pretty close to what you are trying to accomplish.
A couple of notes: Your prologue and epilogue are represented by the Level 1 single-document line in the Formatting section of the Compile dialogue. The chapter folders (like The Curse of the Kidds) is represented by the Level 1+ folder icon, and the files inside of the chapter folders are represented by the “Level 2+” single document icon. You probably don’t have any double-document (stacked) files in the project, so that icon in the Formatting section doesn’t apply to anything; Its presence is neither helpful nor harmful.
As for the title page, when you chose the kind of Scrivener template in the beginning, it grabbed your Contacts information and put in your name & address and some other stuff as if it was typed in by you, unlike the grey text that is dynamic, and will change as you update your contacts (say if you changed your name). So that’s why it didn’t update all of the title page when you set stuff in the Compile Meta-Data section; you’d have to hand-edit that.