Transferring a Word 2016 document with References to Scrivener

Not sure if this is a Scrivener issue or an EndNote one, probably both.

I have a paper written in Word 2016 that has several references that were put in via the Word References function.

I was/am able to get all the references into EndNote, which I use with Scrivener.

If I want now to have the in-text references refer to the EndNote items and not the Word references, is there any way to translate these?