This isn’t happening for me. Since you seem to experiencing general focus/typing/beeping issues, it might be worth logging out and back into your account with the Shift key held down. Just press it the moment you enter your password, and keep it held down until log in is complete. That’ll keep all background utilities and such from running, so no macros, cloud, etc. If these issues go away, then you’ll just have to narrow down which background utility is interfering with input.