This is very last resort: remove everything from Dropbox and put it back.
- Back everything up.
- Check that it really IS BACKED UP. I mean it…!
- Delete everything from the dropbox folder
- Sign into Dropbox web, and make sure the files are gone from there too
- Restore the files
- Wait for them to appear on Dropbox web.
- Hopefully this forces everything to re-sync everywhere else too.