I don’t want my research notes included in my draft so I unchecked “included in draft” on the notecard side menu. The next time I went and opened Scrivener, the checks were back.
I get this, but When I go to File -> Compile, it (rightly) doesn’t give me the option to include research, nor do research notes come out compiled document.
IMO This is more of an ugly GUI issue than a bug as research is separated from the manuscript anyway.