Keith,
I may have my Apple UI guidelines mixed up, but I always thought that Ctrl-click was meant to be synonymous with a right click, if you have a two buttoned mouse?
If that is the case, then you have a bug: right-clicking on the icon at the top of the main text area does not bring up the same menu (with Reveal-in-binder, lock-in-place, etc.) that Ctrl-clicking does.
There may be other situations with the same problem, but this is the first I have noticed.