I managed to fix it! To celebrate it, and the conclusion of my doctorate here is my augmented version of the excellent Scrivener + Quarto template.
Scrivener project file download
https://www.dropbox.com/s/tulnkeepgavck8r/Quarto-Augmented.scriv.zip?dl=1
Sample output
The changes to the original project are documented on page 22.
Changes to the original Scrivener project
Depth override
The section type Attributes .. Header & Text can be used to override the depth of the current binder item; that is to say, change the number of hashes before the title. Place the desired number of hashes in the Attributes metadata field with no space at the end (e.g. ###).
Automatic anchors
All of the Section Layouts received a new prefix: []{#scriv<$linkID>}. This allows us to create links to any binder item whatsoever. Particularly useful to link to sections that do not have a Header element.
Multiple bibliographies
There is a new Section Layout and a new Section Type to provide support for the Multibib/Multiple-bibliographies lua filter. In this way, we can create complex bibliographies with ease, spliting primary and secondary sources. Each bibliography section will be named after the binder item whence it originated, as it happens with any chapter of the text which makes it very easy to managem them.
Only the multiple-bibliographies filter is compatible with the template. The Multibib filter uses a single variable to store all of the file paths, so this creates problems for the template. To use: choose the Multibib section type, fill the Path custom meta-data field with the path to the bib file, and you’re set.
Indexes & glossaries
The multiple-bibliographies filter can be extended in interesting ways using the citation-backlinks filter that links back from the ref-entry in the bibliography to each inline citation in the text. This means that we get to make indexes using Citeproc that work both for LaTeX and HTML (see the output sample linked below).
Generating bibliography files
In order to create these separate bibliographies using Bookends, we could i. create a library for each bibliography section and sync the references to bibtex; ii. use an Applescript to export different Bookends groups as separate bibliography files.
Here is a script that will 1. ask for the prefered format, 2. the file extention and then 3. list all front library groups allowing the selection of multiple items. They will be exported to the folder especified in the BasePath variable.
Applescript for Bookends
set RevealAfterFinish to true
set UseGroupPaths to true -- {"Group 1", "Group 2"} OR {"Path/to/Group 1", "Path/to/Group 2"}
set BasePath to "/Users/bcdav/Dropbox/dev/pandoc/refs/"
set FlattenBool to {"Yes", "No"}
set MarkupList to {"Plain", "BibTeX", "HTML", "RTF"}
set FileExtensionOptions to {".bib", ".bex", ".json", ".md", ".qmd", ".ris", ".txt", ".xml", ".yml"}
set FormatList to {"BibTeX", "BibTeX4Zotero", "RIS", "Endnote XML", "Pandoc.fmt", "AAPG Bulletin.fmt", "ABNT Markdown.fmt", "ABNT MMD.fmt", "ABNT_MD.fmt", "ABNT.fmt", "Antiquity.fmt", "APA 5th Edition.fmt", "APA 6th Edition.fmt", "APA 7th Edition.fmt", "Berliner Blätter.fmt", "BibTeX 2.fmt", "BibTeX.fmt", "BibTeX2.fmt", "BibTeX4Export.fmt", "BibTeX4Export(2).fmt", "BibTeX4Pandoc.fmt", "Chicago 15th A.fmt", "Chicago 15th B.fmt", "Chicago 16th A.fmt", "Chicago 16th B.fmt", "Chicago 17th A.fmt", "Chicago 17th B.fmt", "Discourse Studies.fmt", "DOI.fmt", "DPG (Deutsche Gesellschaft für Psychologie).fmt", "DT3-URL.fmt", "MLA 6th Edition.fmt", "MLA 7th Edition.fmt", "MLA 8th Edition.fmt", "Nature.fmt", "Oxford Author-Date.fmt", "Oxford Notes.fmt", "Pandoc.fmt", "Printout.fmt", "Ref with Abstract.fmt", "Rename.fmt", "RIS 2.fmt", "RIS Export.fmt", "RIS.fmt", "RISwithNote.fmt", "ShortRef.fmt", "Turabian (7th ed).fmt", "Turabian Author-Date.fmt", "Turabian SBTS author-Date.fmt"}
tell application "Bookends"
set theLibraries to library windows
repeat with theLibrary in theLibraries
if UseGroupPaths is true then
set GroupList to my split(return, («event ToySRGPN» given «class PATH»:"true")) -- 1
set GroupList to my simple_sort(GroupList) -- 1
else
set GroupList to name of every group item of theLibrary -- 2
end if
set GroupPaths to my get_opt("Bookends Groups", "Select the desidered groups to be exported as individual bibliography files", GroupList, true)
if GroupPaths is false then error "Please select some items."
set theFormat to item 1 of my get_opt("The Format", "Select the desidered Bookends format", FormatList, false)
set theMarkup to item 1 of my get_opt("The Markup", "", MarkupList, false)
set theExtension to item 1 of my get_opt("The Extension", "The file extension the bibliography files should use", FileExtensionOptions, false)
set Flatten to item 1 of my get_opt("Flatten", "Should the folder structure be flattened?
If you select YES, then all of the files will be exported to BasePath.
If you select NO, then it will recreate the folder structure using /Path/to/Group.", FlattenBool, false)
repeat with GroupPath in GroupPaths
if UseGroupPaths is true then
set theGroup to the last item of my split("/", GroupPath) -- 1
else
set theGroup to GroupPath
end if
set theResult to ""
set theRefs to publication items of group item id theGroup of theLibrary
repeat with theRef in theRefs
if theMarkup is "BibTeX" then
set theRef to format theRef using theFormat as BibTeX
else if theMarkup is "HTML" then
set theRef to format theRef using theFormat as HTML
else if theMarkup is "RTF" then
set theRef to format theRef using theFormat as RTF
else
set theRef to format theRef using theFormat
end if
-- Endnote XML | RIS | plain text
-- Deprecated: set theRef to «event ToySGUID» theID given «class RRTF»:"false", string:"Bibtex"
set theResult to theResult & theRef & linefeed
end repeat
if Flatten is "Yes" then set GroupPath to name of group item id theGroup of theLibrary
set GroupPath to item 1 of (my split(".", GroupPath))
-- set GroupPath to my gsub(my gsub(GroupPath, ".bib", ""), "Bib ", "")
set ExportPath to BasePath & "" & GroupPath & theExtension
-- return ExportPath
my exportSource(theResult, ExportPath)
-- return theGroup
end repeat
if RevealAfterFinish is true then
tell me to do shell script "open " & quoted form of ExportPath & " -R"
end if
end repeat
end tell
on gsub(theString, old, new)
set {TID, text item delimiters} to {text item delimiters, old}
set theStringItems to text items of theString
set text item delimiters to new
set theString to theStringItems as text
set text item delimiters to TID
return theString
end gsub
on join(delim, theContent)
set oldDelims to AppleScript's text item delimiters
set AppleScript's text item delimiters to delim
set theResult to theContent as string
set AppleScript's text item delimiters to oldDelims
return theResult
end join
on split(delim, theString)
try
set oldDelims to AppleScript's text item delimiters
set AppleScript's text item delimiters to delim
set delimitedList to every text item of theString
set AppleScript's text item delimiters to oldDelims
on error
set AppleScript's text item delimiters to oldDelims
end try
return delimitedList
end split
on rb(rb_script)
return do shell script "ruby -r ERB <<EOF
" & rb_script & "
EOF"
end rb
on URLEncode(findThis)
set findThis to paragraphs of findThis
return my rb("puts ERB::Util.url_encode %Q{" & findThis & "}")
end URLEncode
on exportSource(theText, ExportedFile)
set the clipboard to theText
set theFolder to my join("/", (items 1 thru -2 of (my split("/", ExportedFile)))) as string
tell me to do shell script "mkdir -p " & quoted form of theFolder
set theScript to "touch " & quoted form of ExportedFile & " && LANG=pt_BR.UTF-8 pbpaste > " & quoted form of ExportedFile
tell me to do shell script theScript
end exportSource
on simple_sort(my_list)
set the index_list to {}
set the sorted_list to {}
repeat (the number of items in my_list) times
set the low_item to ""
repeat with i from 1 to (number of items in my_list)
if i is not in the index_list then
set this_item to item i of my_list as text
if the low_item is "" then
set the low_item to this_item
set the low_item_index to i
else if this_item comes before the low_item then
set the low_item to this_item
set the low_item_index to i
end if
end if
end repeat
set the end of sorted_list to the low_item
set the end of the index_list to the low_item_index
end repeat
return the sorted_list
end simple_sort
on get_opt(theTitle, thePromt, theList, MultipleSelection)
if MultipleSelection is not false and (count of theList) > 1 then
set theOption to choose from list theList with title theTitle with prompt thePromt with multiple selections allowed
else
set theOption to choose from list theList with title theTitle with prompt thePromt
end if
if theOption is false then error "Aborted."
return theOption as list
end get_opt
I hope these additions prove useful to someone at some point.
EDIT: Updated the Applescript to include new options (Markup) and fix some bugs.